CDS

Accession Number TCMCG057C33457
gbkey CDS
Protein Id XP_018433418.1
Location complement(join(<21980330..21980448,21980595..21980688,21980778..21980852,21981022..21981156,21981238..21981315,21981400..21981498,21981583..21981696,21981827..21981982,21982162..21982290,21982367..21982438,21982510..21982652,21982805..21982871,21982971..21983042,21983219..21983290,21983366..21983488,21983633..21983741,21983842..21983960,21984042..21984092,21984205..21984300,21984371..21984463,21984549..21984599,21984740..21984910,21985002..21985253,21985351..21985842))
Gene LOC108805923
GeneID 108805923
Organism Raphanus sativus

Protein

Length 1214aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018577916.1
Definition PREDICTED: regulator of nonsense transcripts 1 homolog [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Regulator of nonsense transcripts 1 homolog
KEGG_TC -
KEGG_Module M00430        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14326        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko03015        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000932        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009611        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009648        [VIEW IN EMBL-EBI]
GO:0009719        [VIEW IN EMBL-EBI]
GO:0009725        [VIEW IN EMBL-EBI]
GO:0009743        [VIEW IN EMBL-EBI]
GO:0009751        [VIEW IN EMBL-EBI]
GO:0009753        [VIEW IN EMBL-EBI]
GO:0009755        [VIEW IN EMBL-EBI]
GO:0009756        [VIEW IN EMBL-EBI]
GO:0009863        [VIEW IN EMBL-EBI]
GO:0009867        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010182        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032870        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035690        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042493        [VIEW IN EMBL-EBI]
GO:0042742        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046677        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048571        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071229        [VIEW IN EMBL-EBI]
GO:0071236        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071322        [VIEW IN EMBL-EBI]
GO:0071395        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071446        [VIEW IN EMBL-EBI]
GO:0071495        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATTCTCAACACAGCGATCTCTTCGATACGGCATCTCAGCCTGACACCGCGGTGGACGCTTACACCTTTCTTGAATTCAATTCCCAAGGCGATTCGGAGTTCGATTTCCCCGAGTTCCGATCTCCGAACGCATGGCCGACGCCGTCTGATTCCGTCTCCGTAGTCGAGCCTTCCGATCGCACAGCGCCTGCCGCGGCGGATCACCATTCCGAGGCCTCTTCGCCTTCTTCCCTGTCTGCTAAAGCGGGACGCGGTAGTAGCAGCCAGGCTGATGCGTTGGCCGCTGGTGTGGGGAATTTGAACTTCGAGGAGACTGGTGATGATGACGGTGGTTTCGATTACGGCAAGAATGATTTCACGGAGCACGCGTGTAAGTATTGTGGTATCTCGAACCCGGCTTGCGTGGTTAGGTGTAATGTGGCGTCATGTAGGAAGTGGTTCTGCAATTCAAGGGGTAACACCTCCGGCTCGCATATCGTGAATCACCTGGTTCGAGCAAAACACAAGGAAGTTTGTCTGCATAGAGACAGTCCTCTAGGGGAAACAATTCTCGAATGCTACAACTGTGGGTGTCGGAATGTCTTTCTTCTCGGTTTCATCTCAGCAACTACAGACAGTGTTGTCGTCCTTCTCTGTAGAGATCCTTGTTTGAATGTGAATGCACTCAAGGATATGAACTGGGACCTAAGTCAGTGGTGTCCCTTGATTGATGATAGGTGTTTCCTCCCCTGGCTTGTTAAGGTCCCGTATGAGCAGGAACAGCTGAGGGCACGCCAAATTAGTGCACAGCAAATAAACAAGATTGAGGAATTATGGAAGACTAATCCGGATGCTACTCTTGAAGACCTTGAAAAACCTGGTGTAGACGATGAACCTCAGCCTGTTCAACCTAAGTACGAAGATGCATATCAGTATCAAAACGTGTTTGCTCCTCTTATTAAACTCGAAGCAGATTATGACAAGATGATGAAAGAGTCTCAGAGCAAGGAAAATCTCACAGTTCGTTGGGATATTGGTCTTAACAAGAAGCGTGTTGCTTACTTCGTCTTTCCAAAGGAGGAAAATGAATTGCGATTAGTGCCGGGTGATGAGCTACGTCTGCGCTACTCAGGAGATGCTGCTCATCCAGCTTGGCAATCAGTTGGACATGTGGTCAAGCTAACTGCACAAGAGGAGGTTGCTCTTGAACTCCGAGCTAATCAGGGAGTTCCAATCGACGTGAACCATGGATTCTGTGTTGATTTTGTTTGGAAAAGTACAAGCTTTGATCGAATGCAGGGAGCAATGAAGAATTTTGCTGTGGATGAAACAAGTGTGAGTGGTTATATTTACCATCAATTATTGGGACATGAAGTTGAGGCCCAGATGGTCCGGAACACACTACCACGACGTTTTGGGGTACCTGGTCTTCCAGAACTGAATGCATCTCAGATTAATGCAGTGAAGAGTGTTCTTCAGAAGCCCATCAGTTTGATCCAAGGTCCACCTGGCACAGGCAAGACTGTGACTTCTGCTGCAATTGTGTATCACATGGCAAAACAGGGCCAGGGACAGGTTCTCGTTTGTGCCCCAAGTAATGTTGCGGTCGACCAACTAGCAGAAAAAATTAGTGCTACTGGCTTAAAGGTTGTTCGCCTTTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTGACCCTTCACTACCAGGTACGGCATCTTGACACTTCTGAGAAGAGCGAGCTGCATAAGCTACAGCAATTGAAAGATGAACAAGGCGAGCTGTCAAGCAGTGATGAAAAGAAATACAAAAATTTGAAAAGAGCAACAGAACGCGAGATAACCCAGAGTGCTGATGTCATTTGCTCTACTTGTGTTGGTGCTGCGGATCTTCGGCTGTCAAATTTTAGATTTAGACAGGTCCTTATTGATGAGTCTACTCAATCGACAGAACCTGAGTGCCTTATTCCTTTGGTCCTCGGGGTGAAACAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGCCCCGTAATTATGTGCAAGAAAGCAGCTCGTGCTGGCTTGGCACAGTCTCTCTTTGAACGCCTTGTGCTTCTTGGCATTAAACCAATTAGATTGCAGGTTCAATATCGTATGCATCCAGCTTTGTCCGAGTTTCCATCCAATAGCTTCTATGAAGGAACACTACAGAATGGAGTCACGGTTAATGAAAGGCAAACAACAGGGATTGATTTCCCCTGGCCCGTGCCTAATCGGCCCATGTTTTTCTATGTCCAGCTGGGGCAAGAGGAGATCAGTGCTAGTGGAACATCATACCTAAATAGAACCGAGGCTGCTAATGTGGAGAAACTTGTGACCGCTTTCTTAAAGAGTGGGGTTGTCCCCAGTCAGATTGGAGTGATAACTCCATACGAGGGACAGAGGGCATATATTGTTAATTACATGGCAAGAAATGGTTCTCTCCGACAACAACTTTACAAGGAAATTGAGGTTGCCAGTGTTGATTCTTTTCAAGGAAGAGAAAAAGATTACATCATATTGTCCTGTGTCAGAAGTAACGAGCATCAGGGAATTGGATTCCTTAATGATCCACGGAGGCTCAATGTTGCACTGACACGTGCTCGCTATGGAATTGTTATTCTTGGAAACCCAAAGGTTCTTAGTAAACAGCCTCTGTGGAATGGCTTGCTGACACATTACAAGGAACATGAGTGCTTAGTTGAGGGACCTCTTAATAATTTAAAGCAGAGCATGATACAATTTCAAAAACCAAGAAAGATGTATAATGATCGGAGACCATTTTATGGTGGTGGGGCTGGCATGATTGGAAATGATAATCCCAATGCTGACAGAAGAGGCAACCGTGGAAGGGCTGGTGGTTCTTATATGCCTTCTGGCCCACCAAGTGGTTCGAGATTACACCCAGCTGGCTATCCAATACCTAGGGTGCCATTTTCACCGTTTCCTGGTGGTCCTCCTTCTCAGCCATAT
Protein:  
MDSQHSDLFDTASQPDTAVDAYTFLEFNSQGDSEFDFPEFRSPNAWPTPSDSVSVVEPSDRTAPAAADHHSEASSPSSLSAKAGRGSSSQADALAAGVGNLNFEETGDDDGGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISATTDSVVVLLCRDPCLNVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPYEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRANQGVPIDVNHGFCVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQINAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMIQFQKPRKMYNDRRPFYGGGAGMIGNDNPNADRRGNRGRAGGSYMPSGPPSGSRLHPAGYPIPRVPFSPFPGGPPSQPYAIPTRGPVGTGRGSSAGGHLPHQQATQHNVGTIGPNVNYPLDSPNSQPSPGGPLSQPGYGSQAFRDGFMGGISQDFLGDDFKSQGSHVPYNMGDYSTQGGYAVEYNTQGPHGAFTGNFMNQNSQGGYSRFSGSNDFMSQEYMAHGAQGLFTQAGFIDSSQDDGQQNPFGVNNPSLQSQGLPNSLYSQPFSHYTQPLNLSGPQQSQPPNQGSQNPKLPHNG